Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024987-SRR6024988/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  183,002,217
 Normal Paired: 179,490,163 (98.08%)
 Chimeric Paired: 15,210 (0.01%)
 Chimeric Ambiguous: 11,767 (0.01%)
 Unmapped: 3,485,077 (1.90%)
 Ligation Motif Present: 44,085 (0.02%)
Alignable (Normal+Chimeric Paired): 179,505,373 (98.09%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-07T15:14:40,600]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 63,242,651 (34.56%)
PCR Duplicates: 116,262,722 (63.53%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 68,130,130
Intra-fragment Reads: 31,108,545 (17.00% / 49.19%)
Below MAPQ Threshold: 12,899,122 (7.05% / 20.40%)
Hi-C Contacts: 19,234,984 (10.51% / 30.41%)
 Ligation Motif Present: 11,035  (0.01% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 4,351,858  (2.38% / 6.88%)
Intra-chromosomal: 14,883,126  (8.13% / 23.53%)
Short Range (<20Kb): 9,946,595  (5.44% / 15.73%)
Long Range (>20Kb): 4,936,494  (2.70% / 7.81%)